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EcogeneTopic Page
TopicPage for Non-Core971 of Escherichia coli K-12
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Description:
Non-Core971 is a set of 971 sequences including 908 genes and 63 pseudogenes that are not common to five E. coli strains (Davids, 2008). These include strain- and lineage-specific genes but the horizontally transmitted HT, prophage and IS genes have been removed from Non-Core971 by Davids (2008) or EcoGene..
Details:
Using a gene by gene similarity comparison of five genomes and codon correspondence analysis, Davids (2008) identified and then refined three non-overlapping gene sets as core (2158 genes), non-core (1044 genes), and HGT (HT, 1053 genes).
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